Alexander Rives
New York University
N/A
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences A Rives, S Goyal, J Meier, D Guo, M Ott, CL Zitnick, J Ma, R Fergus bioRxiv, 622803, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:qjMakFHDy7sC Cited by: 1740
Evolutionary-scale prediction of atomic level protein structure with a language model Z Lin, H Akin, R Rao, B Hie, Z Zhu, W Lu, N Smetanin, R Verkuil, O Kabeli, … bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:ufrVoPGSRksC Cited by: 1648
Modular organization of cellular networks AW Rives, T Galitski Proceedings of the National Academy of Sciences 100 (3), 1128-1133, 2003 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:u5HHmVD_uO8C Cited by: 970
MSA Transformer R Rao, J Liu, R Verkuil, J Meier, JF Canny, P Abbeel, T Sercu, A Rives bioRxiv, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:Tyk-4Ss8FVUC Cited by: 517
Language models enable zero-shot prediction of the effects of mutations on protein function J Meier, R Rao, R Verkuil, J Liu, T Sercu, A Rives bioRxiv, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:W7OEmFMy1HYC Cited by: 428
Learning inverse folding from millions of predicted structures C Hsu, R Verkuil, J Liu, Z Lin, B Hie, T Sercu, A Lerer, A Rives bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:YsMSGLbcyi4C Cited by: 277
Transformer protein language models are unsupervised structure learners R Rao, J Meier, T Sercu, S Ovchinnikov, A Rives bioRxiv, 2020 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:IjCSPb-OGe4C Cited by: 262
Derivation of genetic interaction networks from quantitative phenotype data BL Drees, V Thorsson, GW Carter, AW Rives, MZ Raymond, … Genome biology 6 (4), 1-10, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:u-x6o8ySG0sC Cited by: 156
Language models generalize beyond natural proteins R Verkuil, O Kabeli, Y Du, BIM Wicky, LF Milles, J Dauparas, D Baker, … bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:_FxGoFyzp5QC Cited by: 60
Energy-based models for atomic-resolution protein conformations Y Du, J Meier, J Ma, R Fergus, A Rives International Conference on Learning Representations, 2020 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:2osOgNQ5qMEC Cited by: 56
A high-level programming language for generative protein design B Hie, S Candido, Z Lin, O Kabeli, R Rao, N Smetanin, T Sercu, A Rives bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:LkGwnXOMwfcC Cited by: 25
Deep generative models create new and diverse protein structures Z Lin, T Sercu, Y LeCun, A Rives Machine Learning for Structural Biology Workshop, NeurIPS, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:WF5omc3nYNoC Cited by: 18
Neural Potts Model T Sercu, R Verkuil, J Meier, B Amos, Z Lin, C Chen, J Liu, Y LeCun, … bioRxiv, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:Y0pCki6q_DkC Cited by: 11
Simulating 500 million years of evolution with a language model T Hayes, R Rao, H Akin, NJ Sofroniew, D Oktay, Z Lin, R Verkuil, VQ Tran, … bioRxiv, 2024.07. 01.600583, 2024 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:Se3iqnhoufwC Cited by: 1
Seq2MSA: A language model for protein sequence diversification P Sturmfels, R Rao, R Verkuil, Z Lin, O Kabeli, T Sercu, A Lerer, A Rives N/A Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:roLk4NBRz8UC Cited by: 1
Alexander Rives
New York University
N/A
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences A Rives, S Goyal, J Meier, D Guo, M Ott, CL Zitnick, J Ma, R Fergus bioRxiv, 622803, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:qjMakFHDy7sC Cited by: 1740
Evolutionary-scale prediction of atomic level protein structure with a language model Z Lin, H Akin, R Rao, B Hie, Z Zhu, W Lu, N Smetanin, R Verkuil, O Kabeli, … bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:ufrVoPGSRksC Cited by: 1648
Modular organization of cellular networks AW Rives, T Galitski Proceedings of the National Academy of Sciences 100 (3), 1128-1133, 2003 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:u5HHmVD_uO8C Cited by: 970
MSA Transformer R Rao, J Liu, R Verkuil, J Meier, JF Canny, P Abbeel, T Sercu, A Rives bioRxiv, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:Tyk-4Ss8FVUC Cited by: 517
Language models enable zero-shot prediction of the effects of mutations on protein function J Meier, R Rao, R Verkuil, J Liu, T Sercu, A Rives bioRxiv, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:W7OEmFMy1HYC Cited by: 428
Learning inverse folding from millions of predicted structures C Hsu, R Verkuil, J Liu, Z Lin, B Hie, T Sercu, A Lerer, A Rives bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:YsMSGLbcyi4C Cited by: 277
Transformer protein language models are unsupervised structure learners R Rao, J Meier, T Sercu, S Ovchinnikov, A Rives bioRxiv, 2020 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:IjCSPb-OGe4C Cited by: 262
Derivation of genetic interaction networks from quantitative phenotype data BL Drees, V Thorsson, GW Carter, AW Rives, MZ Raymond, … Genome biology 6 (4), 1-10, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:u-x6o8ySG0sC Cited by: 156
Language models generalize beyond natural proteins R Verkuil, O Kabeli, Y Du, BIM Wicky, LF Milles, J Dauparas, D Baker, … bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:_FxGoFyzp5QC Cited by: 60
Energy-based models for atomic-resolution protein conformations Y Du, J Meier, J Ma, R Fergus, A Rives International Conference on Learning Representations, 2020 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:2osOgNQ5qMEC Cited by: 56
A high-level programming language for generative protein design B Hie, S Candido, Z Lin, O Kabeli, R Rao, N Smetanin, T Sercu, A Rives bioRxiv, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:LkGwnXOMwfcC Cited by: 25
Deep generative models create new and diverse protein structures Z Lin, T Sercu, Y LeCun, A Rives Machine Learning for Structural Biology Workshop, NeurIPS, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:WF5omc3nYNoC Cited by: 18
Neural Potts Model T Sercu, R Verkuil, J Meier, B Amos, Z Lin, C Chen, J Liu, Y LeCun, … bioRxiv, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:Y0pCki6q_DkC Cited by: 11
Simulating 500 million years of evolution with a language model T Hayes, R Rao, H Akin, NJ Sofroniew, D Oktay, Z Lin, R Verkuil, VQ Tran, … bioRxiv, 2024.07. 01.600583, 2024 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:Se3iqnhoufwC Cited by: 1
Seq2MSA: A language model for protein sequence diversification P Sturmfels, R Rao, R Verkuil, Z Lin, O Kabeli, T Sercu, A Lerer, A Rives N/A Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=vqb78-gAAAAJ&citationforview=vqb78-gAAAAJ:roLk4NBRz8UC Cited by: 1
Youtube Title: Alexander Rives - Evolutionary Scale Language Models
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Youtube Channel Name: Machine Learning in Computational Biology
Youtube Channel Link: https://www.youtube.com/@mlcbconf
Alexander Rives - Evolutionary Scale Language Models
Youtube Title: October 23, 2023
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Youtube Channel Name: Alexander Rives
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October 23, 2023
Youtube Title: January 20, 2024
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Youtube Channel Name: Alexander Rives
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January 20, 2024
Youtube Title: September 24, 2023
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Youtube Channel Name: Alexander Rives
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September 24, 2023
Youtube Title: January 9, 2024
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Youtube Channel Name: Alexander Rives
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January 9, 2024
Youtube Title: September 24, 2023
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Youtube Channel Name: Alexander Rives
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September 24, 2023
Youtube Title: Simon Cowell Gives Alex Rivers a Second Chance to Redeem Himself | AGT 2022
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Youtube Channel Name: America's Got Talent
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Simon Cowell Gives Alex Rivers a Second Chance to Redeem Himself | AGT 2022
Youtube Title: Alex Yurkiv, Thelma Costolo - Take Me to the River (I Will Swim) (Live)
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Youtube Channel Name: AlexAndThelmaVEVO
Youtube Channel Link: https://www.youtube.com/@AlexAndThelmaVEVO-of2wn
Alex Yurkiv, Thelma Costolo - Take Me to the River (I Will Swim) (Live)
Youtube Title: TEDxCaltech - Rives - TEDxCaltech Deconstruction
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Youtube Channel Name: TEDx Talks
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TEDxCaltech - Rives - TEDxCaltech Deconstruction
Youtube Title: AS 20 MELHORES DE JOHNNY RIVERS !!!
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Youtube Channel Name: O Canal das Músicas Oficial
Youtube Channel Link: https://www.youtube.com/@ocanaldasmusicasoficial3963
AS 20 MELHORES DE JOHNNY RIVERS !!!
Youtube Title: River Flows In You (Deep House Remix) - Alexandre Pachabezian
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Youtube Channel Name: alexpianistedj
Youtube Channel Link: https://www.youtube.com/channel/UC1lBrmuU4FwPjgo7NWBopKQ
River Flows In You (Deep House Remix) - Alexandre Pachabezian
Youtube Title: Italo Disco / Ross Alexander - I Love My Radio (Tano Rives Edit) DEMO
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Youtube Channel Name: DJ TANO RIVES
Youtube Channel Link: https://www.youtube.com/@DjTanoRIVES
Italo Disco / Ross Alexander - I Love My Radio (Tano Rives Edit) DEMO
Youtube Title: The Hidden Forces of New York: T.M. Rives at TEDxSpenceSchool
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Youtube Channel Name: TEDxYouth
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The Hidden Forces of New York: T.M. Rives at TEDxSpenceSchool
Youtube Title: Rives: The Museum of Four in the Morning
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Youtube Channel Name: TED
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Rives: The Museum of Four in the Morning
Youtube Title: TEDxEastSalon - T.M. Rives - The Nature Hole
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Youtube Channel Name: TEDx Talks
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TEDxEastSalon - T.M. Rives - The Nature Hole
Youtube Title: Alexandre Pachabezian - The Rise (Official Video)
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Youtube Channel Name: alexpianistedj
Youtube Channel Link: https://www.youtube.com/channel/UC1lBrmuU4FwPjgo7NWBopKQ
Alexandre Pachabezian - The Rise (Official Video)
Youtube Title: Alexander Rives - Evolutionary Scale Language Models
Youtube Link: link
Youtube Channel Name: Machine Learning in Computational Biology
Youtube Channel Link: https://www.youtube.com/@mlcbconf
Alexander Rives - Evolutionary Scale Language Models
Youtube Title: October 23, 2023
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Youtube Channel Name: Alexander Rives
Youtube Channel Link: https://www.youtube.com/@AlexanderRives-rb9kp
October 23, 2023
Youtube Title: January 20, 2024
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Youtube Channel Name: Alexander Rives
Youtube Channel Link: https://www.youtube.com/@AlexanderRives-cp6ze
January 20, 2024
Youtube Title: September 24, 2023
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Youtube Channel Name: Alexander Rives
Youtube Channel Link: https://www.youtube.com/@AlexanderRives-rb9kp
September 24, 2023
Youtube Title: January 9, 2024
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Youtube Channel Name: Alexander Rives
Youtube Channel Link: https://www.youtube.com/@AlexanderRives-cp6ze
January 9, 2024
Youtube Title: September 24, 2023
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Youtube Channel Name: Alexander Rives
Youtube Channel Link: https://www.youtube.com/@AlexanderRives-rb9kp
September 24, 2023
Youtube Title: Simon Cowell Gives Alex Rivers a Second Chance to Redeem Himself | AGT 2022
Youtube Link: link
Youtube Channel Name: America's Got Talent
Youtube Channel Link: https://www.youtube.com/@AGT
Simon Cowell Gives Alex Rivers a Second Chance to Redeem Himself | AGT 2022
Youtube Title: Alex Yurkiv, Thelma Costolo - Take Me to the River (I Will Swim) (Live)
Youtube Link: link
Youtube Channel Name: AlexAndThelmaVEVO
Youtube Channel Link: https://www.youtube.com/@AlexAndThelmaVEVO-of2wn
Alex Yurkiv, Thelma Costolo - Take Me to the River (I Will Swim) (Live)
Youtube Title: TEDxCaltech - Rives - TEDxCaltech Deconstruction
Youtube Link: link
Youtube Channel Name: TEDx Talks
Youtube Channel Link: https://www.youtube.com/@TEDx
TEDxCaltech - Rives - TEDxCaltech Deconstruction
Youtube Title: AS 20 MELHORES DE JOHNNY RIVERS !!!
Youtube Link: link
Youtube Channel Name: O Canal das Músicas Oficial
Youtube Channel Link: https://www.youtube.com/@ocanaldasmusicasoficial3963
AS 20 MELHORES DE JOHNNY RIVERS !!!
Youtube Title: River Flows In You (Deep House Remix) - Alexandre Pachabezian
Youtube Link: link
Youtube Channel Name: alexpianistedj
Youtube Channel Link: https://www.youtube.com/channel/UC1lBrmuU4FwPjgo7NWBopKQ
River Flows In You (Deep House Remix) - Alexandre Pachabezian
Youtube Title: Italo Disco / Ross Alexander - I Love My Radio (Tano Rives Edit) DEMO
Youtube Link: link
Youtube Channel Name: DJ TANO RIVES
Youtube Channel Link: https://www.youtube.com/@DjTanoRIVES
Italo Disco / Ross Alexander - I Love My Radio (Tano Rives Edit) DEMO
Youtube Title: The Hidden Forces of New York: T.M. Rives at TEDxSpenceSchool
Youtube Link: link
Youtube Channel Name: TEDxYouth
Youtube Channel Link: https://www.youtube.com/@TEDxYouth
The Hidden Forces of New York: T.M. Rives at TEDxSpenceSchool
Youtube Title: Rives: The Museum of Four in the Morning
Youtube Link: link
Youtube Channel Name: TED
Youtube Channel Link: https://www.youtube.com/@TED
Rives: The Museum of Four in the Morning
Youtube Title: TEDxEastSalon - T.M. Rives - The Nature Hole
Youtube Link: link
Youtube Channel Name: TEDx Talks
Youtube Channel Link: https://www.youtube.com/@TEDx
TEDxEastSalon - T.M. Rives - The Nature Hole
Youtube Title: Alexandre Pachabezian - The Rise (Official Video)
Youtube Link: link
Youtube Channel Name: alexpianistedj
Youtube Channel Link: https://www.youtube.com/channel/UC1lBrmuU4FwPjgo7NWBopKQ
Alexandre Pachabezian - The Rise (Official Video)