Andrey Tovchigrechko
Director, Bioinformatics and Sequencing, BioNTech US
https://www.linkedin.com/in/andreyto/
GRAMM-X public web server for protein–protein docking A Tovchigrechko, IA Vakser Nucleic acids research 34 (suppl2), W310-W314, 2006 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:u5HHmVDuO8C Cited by: 847
Genomic and functional adaptation in surface ocean planktonic prokaryotes S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, … Nature 468 (7320), 60-66, 2010 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:zYLM7Y9cAGgC Cited by: 312
Functional tradeoffs underpin salinity-driven divergence in microbial community composition CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, … PloS one 9 (2), e89549, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:ULOm3_A8WrAC Cited by: 205
Development and testing of an automated approach to protein docking A Tovchigrechko, IA Vakser Proteins: Structure, Function, and Bioinformatics 60 (2), 296-301, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:_FxGoFyzp5QC Cited by: 198
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, … Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:aqlVkmm33-oC Cited by: 168
Metagenomic exploration of viruses throughout the Indian Ocean SJ Williamson, LZ Allen, HA Lorenzi, DW Fadrosh, D Brami, … Public Library of Science 7 (10), e42047, 2012 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:MXK_kJrjxJIC Cited by: 134
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis SV Rajagopala, S Yooseph, DM Harkins, KJ Moncera, KB Zabokrtsky, … BMC genomics 17, 1-10, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:mVmsd5A6BfQC Cited by: 127
Docking of protein models A Tovchigrechko, CA Wells, IA Vakser Protein Science 11 (8), 1888-1896, 2002 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:WF5omc3nYNoC Cited by: 127
RsfA (YbeB) proteins are conserved ribosomal silencing factors R Häuser, M Pech, J Kijek, H Yamamoto, B Titz, F Naeve, … PLoS genetics 8 (7), e1002815, 2012 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:qjMakFHDy7sC Cited by: 113
How common is the funnel‐like energy landscape in protein‐protein interactions? A Tovchigrechko, IA Vakser Protein science 10 (8), 1572-1583, 2001 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:ufrVoPGSRksC Cited by: 108
Dockground resource for studying protein–protein interfaces D Douguet, HC Chen, A Tovchigrechko, IA Vakser Bioinformatics 22 (21), 2612-2618, 2006 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:u-x6o8ySG0sC Cited by: 107
Differences in the nasopharyngeal microbiome during acute respiratory tract infection with human rhinovirus and respiratory syncytial virus in infancy C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, … The Journal of infectious diseases 214 (12), 1924-1928, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:QIV2ME_5wuYC Cited by: 102
Towards a standard diet-induced and biopsy-confirmed mouse model of non-alcoholic steatohepatitis: Impact of dietary fat source ML Boland, D Oró, KS Tølbøl, ST Thrane, JC Nielsen, TS Cohen, … World journal of gastroenterology 25 (33), 4904, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:BqipwSGYUEgC Cited by: 96
S. aureus evades macrophage killing through NLRP3-dependent effects on mitochondrial trafficking TS Cohen, ML Boland, BB Boland, V Takahashi, A Tovchigrechko, Y Lee, … Cell reports 22 (9), 2431-2441, 2018 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:NMxIlDl6LWMC Cited by: 90
DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking Y Gao, D Douguet, A Tovchigrechko, IA Vakser Proteins: Structure, Function, and Bioinformatics 69 (4), 845-851, 2007 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:d1gkVwhDpl0C Cited by: 82
Minimally invasive sampling method identifies differences in taxonomic richness of nasal microbiomes in young infants associated with mode of delivery MH Shilts, C Rosas-Salazar, A Tovchigrechko, EK Larkin, M Torralba, … Microbial ecology 71, 233-242, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:M3ejUd6NZC8C Cited by: 81
Nasopharyngeal microbiome in respiratory syncytial virus resembles profile associated with increased childhood asthma risk C Rosas-Salazar, MH Shilts, A Tovchigrechko, JD Chappell, EK Larkin, … American journal of respiratory and critical care medicine 193 (10), 1180-1183, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:4DMP91E08xMC Cited by: 76
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, … Journal of Allergy and Clinical Immunology 142 (5), 1447-1456. e9, 2018 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:mB3voiENLucC Cited by: 75
Global molecular epidemiology of respiratory syncytial virus from the 2017− 2018 INFORM-RSV Study DE Tabor, F Fernandes, AC Langedijk, D Wilkins, RJ Lebbink, … Journal of Clinical Microbiology 59 (1), 10.1128/jcm. 01828-20, 2020 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:vV6vV6tmYwMC Cited by: 74
Parallelizing BLAST and SOM algorithms with MapReduce-MPI library SJ Sul, A Tovchigrechko 2011 IEEE International Symposium on Parallel and Distributed Processing …, 2011 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=ULtDvKYAAAAJ&citationforview=ULtDvKYAAAAJ:roLk4NBRz8UC Cited by: 67
Granger G. Sutton III googlescholarauthorid grangerg.suttoniii.md:QlMHNn0AAAAJ
Peter Uetz googlescholarauthorid peteruetz.md:kBVT3a4AAAAJ
Chris Dupont googlescholarauthorid chrisdupont.md:d9y_cyIAAAAJ
Mathangi Thiagarajan googlescholarauthorid mathangithiagarajan.md:ZKJaTzYAAAAJ
Björn Titz googlescholarauthorid björntitz.md:7qoY88sAAAAJ
Seung-Jin Sul googlescholarauthorid seung-jinsul.md:dcJghPQAAAAJ
Samuel H Payne googlescholarauthorid samuelh_payne.md:swwEMmAAAAAJ
Andrew E. Allen googlescholarauthorid andrewe._allen.md:VYgwsI8AAAAJ
Youtube Title: Building a clinically validated de-novo assembly workflow with CWL and Galaxy
Youtube Link: link
Youtube Channel Name: Common Workflow Language
Youtube Channel Link: https://www.youtube.com/@CommonWL
Building a clinically validated de-novo assembly workflow with CWL and Galaxy
Youtube Title: Matan Eliakim VS Yair Cohen - israel karate championship final
Youtube Link: link
Youtube Channel Name: יוסף אלקובי
Youtube Channel Link: https://www.youtube.com/@Yosefalkobi
Matan Eliakim VS Yair Cohen - israel karate championship final
Youtube Title: History of Science and Technology Q&A (May 18, 2022)
Youtube Link: link
Youtube Channel Name: Wolfram
Youtube Channel Link: https://www.youtube.com/@WolframResearch
History of Science and Technology Q&A (May 18, 2022)
Youtube Title: Eurasian Orthopedic Forum, Biodegradable implants Webinar, English translation
Youtube Link: link
Youtube Channel Name: Bioretec
Youtube Channel Link: https://www.youtube.com/@bioretec1
Eurasian Orthopedic Forum, Biodegradable implants Webinar, English translation
Youtube Title: Cloud Computing - What Do Researchers Want? - A Panel Discussion
Youtube Link: link
Youtube Channel Name: Microsoft Research
Youtube Channel Link: https://www.youtube.com/@MicrosoftResearch
Cloud Computing - What Do Researchers Want? - A Panel Discussion
Youtube Title: ŚKKK z Daniel Bukowy
Youtube Link: link
Youtube Channel Name: Daniel Woźniak
Youtube Channel Link: https://www.youtube.com/@16chaozu16
ŚKKK z Daniel Bukowy
Youtube Title: FOMIN DANIIL KYOKUSHIN KARATE
Youtube Link: link
Youtube Channel Name: 74 74
Youtube Channel Link: https://www.youtube.com/@user-gx1sj2se3w
FOMIN DANIIL KYOKUSHIN KARATE
Youtube Title: ПРО 100 ЛУЧШИХ ПЛАКАТОВ — 1 СЕРИЯ — спецпроект о швейцарской выставке 100 Beste Plakate 20
Youtube Link: link
Youtube Channel Name: Серёжа Рассказов о Дизайне
Youtube Channel Link: https://www.youtube.com/@lettersign
ПРО 100 ЛУЧШИХ ПЛАКАТОВ — 1 СЕРИЯ — спецпроект о швейцарской выставке 100 Beste Plakate 20
Youtube Title: Optimizing Brain Health with Cutting-Edge Therapies, peptides and more
Youtube Link: link
Youtube Channel Name: Lisa Tamati
Youtube Channel Link: https://www.youtube.com/@LisaTamatiCoach
Optimizing Brain Health with Cutting-Edge Therapies, peptides and more
Youtube Title: Can investors contribute to the sustainable management of biodiversity?
Youtube Link: link
Youtube Channel Name: University of Technology Sydney
Youtube Channel Link: https://www.youtube.com/@utschannel
Can investors contribute to the sustainable management of biodiversity?