David Juergens
PhD Student, University of Washington
N/A
De novo design of protein structure and function with RFdiffusion JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim, HE Eisenach, … Nature 620 (7976), 1089-1100, 2023 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:YsMSGLbcyi4C
Scaffolding protein functional sites using deep learning J Wang, S Lisanza, D Juergens, D Tischer, JL Watson, KM Castro, … Science 377 (6604), 387-394, 2022 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:2osOgNQ5qMEC
Protein sequence design by conformational landscape optimization C Norn, BIM Wicky, D Juergens, S Liu, D Kim, D Tischer, B Koepnick, … Proceedings of the National Academy of Sciences 118 (11), e2017228118, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:qjMakFHDy7sC
De novo design of high-affinity binders of bioactive helical peptides S Vázquez Torres, PJY Leung, P Venkatesh, ID Lutz, F Hink, HH Huynh, … Nature 626 (7998), 435-442, 2024 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:_FxGoFyzp5QC
HIV detection from human serum with paper-based isotachophoretic RNA extraction and reverse transcription recombinase polymerase amplification AT Bender, BP Sullivan, JY Zhang, DC Juergens, L Lillis, DS Boyle, … Analyst 146 (9), 2851-2861, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:u-x6o8ySG0sC
Design of stimulus-responsive two-state hinge proteins F Praetorius, PJY Leung, MH Tessmer, A Broerman, C Demakis, … Science 381 (6659), 754-760, 2023 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:Y0pCki6q_DkC
Zero‐shot mutation effect prediction on protein stability and function using RoseTTAFold S Mansoor, M Baek, D Juergens, JL Watson, D Baker Protein Science 32 (11), e4780, 2023 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:eQOLeE2rZwMC
De novo design of diverse small molecule binders and sensors using Shape Complementary Pseudocycles L An, M Said, L Tran, S Majumder, I Goreshnik, GR Lee, D Juergens, … bioRxiv, 2023 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:LkGwnXOMwfcC
Scaffolding protein functional sites using deep learning D Baker, J Wang, R Ragotte, L Milles, JL Watson, D Juergens, S Lisanza, … US Patent App. 18/339,519, 2023 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:roLk4NBRz8UC
Transformer-based models for protein structure generation A Bhatnagar, D Juergens, P Rangarajan N/A Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=k6PhNDQAAAAJ&citationforview=k6PhNDQAAAAJ:9yKSN-GCB0IC