doi.bio/krzysztof_fidelis


Krzysztof Fidelis

Early Career and Education

Krzysztof Fidelis is a Polish research professor at the University of California, Davis, with previous affiliations with Lawrence Livermore National Laboratory and Uppsala University. Fidelis co-founded the Critical Assessment of Structure Prediction (CASP) initiative in 1994 with John Moult to evaluate modelling methods in structural biology. Fidelis also heads the Protein Structure Prediction Center, first established at Lawrence Livermore National Laboratory from 1994 to 2005, and then at UC Davis from 2005 onwards.

Research Focus and Notable Works

Fidelis' research primarily focuses on the development of methods for structure modelling assessment, and he has contributed to research in CASP and protein structure prediction. He has an h-index of 45 and has co-authored 85 publications, receiving 7781 citations.

One of his notable works includes a paper on a measure for evaluating secondary structure prediction methods, which was published in the Journal of Molecular Biology in 1999. This paper introduced a measure based on secondary structure segments rather than individual residues, improving the ability to discriminate between similar and dissimilar segment distributions.

Fidelis has also collaborated on applied modelling projects, such as producing structural models for the Rad1 cell cycle checkpoint proteins. Additionally, his group has used genome-wide yeast binding-site and microarray expression data to demonstrate the combinatorial nature of gene regulation, providing specific data on how binding sites can be combined to allow a large number of expression outcomes with relatively few transcription factors.

CASP Initiative

The CASP initiative, now in its fifteenth biennial assessment, involves approximately one hundred research groups worldwide, with over 67,000 submissions on approximately one hundred protein modelling targets submitted in the last round. The initiative aims to advance protein structure modelling by conducting community-wide assessments to determine the strengths and weaknesses of current methods, fostering progress in the field.

Other Affiliations and Recognition

Fidelis is also affiliated with the University of Warsaw, the University of Maryland, the Swiss Institute of Bioinformatics, and the Sapienza University of Rome. He has been recognised for his contributions to the field, with his works being cited and referenced in numerous publications.

Krzysztof Fidelis

Overview

Krzysztof Fidelis is a Research Professor at the University of California, Davis, with expertise in structural bioinformatics, bioinformatics and computational biology, and computational structural biology. He has made significant contributions to the field of protein structure prediction and critical assessment, particularly through his involvement with the Critical Assessment of Structure Prediction (CASP) program.

Education and Career

Krzysztof Fidelis' educational background and career path are not readily available. However, he is currently a Research Professor at the University of California, Davis, and has previously held positions at other institutions, including the University of Warsaw, Rutgers University, and the University of Valencia.

Research and Publications

Fidelis' research interests lie in the field of computational biology, with a focus on protein structure prediction and critical assessment. He has authored and co-authored numerous publications, including:

Critical Assessment of Structure Prediction (CASP)

Fidelis is closely associated with the Critical Assessment of Structure Prediction (CASP) program, which aims to evaluate and advance methods for computing protein structures from amino acid sequences. He has co-authored several publications detailing the outcomes and advancements of successive CASP experiments, such as:

Grants and Funding

Fidelis has received grants and funding from the National Institute of Health (NIH) and the National Institute of General Medical Sciences (NIGMS) for his work on the CASP program. The grants support the infrastructure, evaluation, and dissemination of knowledge gained through CASP, as well as the development of new initiatives within structural biology.

Google Scholar Profile

Krzysztof Fidelis)

Google Scholar

Krzysztof Fidelis Research Professor, University of California, Davis N/A A large‐scale experiment to assess protein structure prediction methods J Moult, JT Pedersen, R Judson, K Fidelis Proteins: Structure, Function, and Bioinformatics 23 (3), ii-iv, 1995 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:9yKSN-GCB0IC Cited by: 672

Critical assessment of methods of protein structure prediction (CASP): round III J Moult, T Hubbard, K Fidelis, JT Pedersen Proteins: Structure, Function, and Bioinformatics 37 (S3), 2-6, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u5HHmVD_uO8C Cited by: 547

Critical assessment of methods of protein structure prediction (CASP)—Round XIII A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 87 (12), 1011-1020, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:a0OBvERweLwC Cited by: 510

Critical assessment of methods of protein structure prediction (CASP)—round x J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 82, 1-6, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:hMod-77fHWUC Cited by: 489

A modified definition of Sov, a segment‐based measure for protein secondary structure prediction assessment A Zemla, Č Venclovas, K Fidelis, B Rost Proteins: Structure, Function, and Bioinformatics 34 (2), 220-223, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u-x6o8ySG0sC Cited by: 478

Critical assessment of methods of protein structure prediction (CASP)—Round XII J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 86, 7-15, 2018 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ZHo1McVdvXMC Cited by: 375

Critical assessment of methods of protein structure prediction (CASP)—Round XIV A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 89 (12), 1607-1617, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UxriW0iASnsC Cited by: 370

Processing and analysis of CASP3 protein structure predictions A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 37 (S3), 22-29, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UeHWp8X0CEIC Cited by: 352

Functional characterization of Ape1 variants identified in the human population MZ Hadi, MA Coleman, K Fidelis, HW Mohrenweiser, DM Wilson III Nucleic acids research 28 (20), 3871-3879, 2000 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Tyk-4Ss8FVUC Cited by: 308

Critical assessment of methods of protein structure prediction—Round VII J Moult, K Fidelis, A Kryshtafovych, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 69 (S8), 3-9, 2007 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2osOgNQ5qMEC Cited by: 294

Critical assessment of methods of protein structure prediction (CASP)‐round V J Moult, K Fidelis, A Zemla, T Hubbard Proteins: Structure, Function, and Bioinformatics 53 (S6), 334-339, 2003 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:d1gkVwhDpl0C Cited by: 289

System and method for integrating and accessing multiple data sources within a data warehouse architecture CR Musick, T Critchlow, M Ganesh, T Slezak, K Fidelis US Patent 7,152,070, 2006 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:QIV2ME_5wuYC Cited by: 284

Critical assessment of methods of protein structure prediction (CASP)—round IX J Moult, K Fidelis, A Kryshtafovych, A Tramontano Proteins: Structure, Function, and Bioinformatics 79 (S10), 1-5, 2011 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:WF5omc3nYNoC Cited by: 274

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 84, 4-14, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:W7OEmFMy1HYC Cited by: 272

Critical assessment of methods of protein structure prediction—Round VIII J Moult, K Fidelis, A Kryshtafovych, B Rost, A Tramontano Proteins: Structure, Function, and Bioinformatics 77 (S9), 1-4, 2009 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2P1L_qKh6hAC Cited by: 255

Progress over the first decade of CASP experiments A Kryshtafovych, Č Venclovas, K Fidelis, J Moult PROTEINS: structure, function, and bioinformatics 61 (S7), 225-236, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:zYLM7Y9cAGgC Cited by: 234

Critical assessment of methods of protein structure prediction (CASP)—round 6 J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 61 (S7), 3-7, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:IjCSPb-OGe4C Cited by: 222

A sliding clamp model for the Rad1 family of cell cycle checkpoint proteins MP Thelen, Č Venclovas, K Fidelis Cell 96 (6), 769-770, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Y0pCki6q_DkC Cited by: 196

Processing and evaluation of predictions in CASP4 A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 45 (S5), 13-21, 2001 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ufrVoPGSRksC Cited by: 186

Assessment of protein disorder region predictions in CASP10 B Monastyrskyy, A Kryshtafovych, J Moult, A Tramontano, K Fidelis Proteins: Structure, Function, and Bioinformatics 82, 127-137, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:e5wmG9Sq2KIC Cited by: 178

Co-authors

Andriy Kryshtafovych tZ_xqbAAAAAJ

John Moult 7r7q_IkAAAAJ

Anna Tramontano HecX1PUAAAAJ

Torsten Schwede sX-HeS8AAAAJ

Česlovas Venclovas wBKBzVoAAAAJ

Adam Zemla kF_iG64AAAAJ

Tim Hubbard LvkRz3UAAAAJ

Burkhard Rost BP3ofxcAAAAJ

Maya Topf O4iPLEgAAAAJ

Torgeir R. Hvidsten rMkIGowAAAAJ

Jan Torleif Pedersen, PhD TjpAqJIAAAAJ

Gaetano T Montelione, Constellation… mrtpF44AAAAJ

Richard Judson ovOQEPQAAAAJ

Andrzej Joachimiak 8mjZj44AAAAJ

Jerzy Tiuryn 1iFPnFwAAAAJ

Google Scholar

Krzysztof Fidelis Research Professor, University of California, Davis N/A A large‐scale experiment to assess protein structure prediction methods J Moult, JT Pedersen, R Judson, K Fidelis Proteins: Structure, Function, and Bioinformatics 23 (3), ii-iv, 1995 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:9yKSN-GCB0IC Cited by: 672

Critical assessment of methods of protein structure prediction (CASP): round III J Moult, T Hubbard, K Fidelis, JT Pedersen Proteins: Structure, Function, and Bioinformatics 37 (S3), 2-6, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u5HHmVD_uO8C Cited by: 547

Critical assessment of methods of protein structure prediction (CASP)—Round XIII A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 87 (12), 1011-1020, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:a0OBvERweLwC Cited by: 510

Critical assessment of methods of protein structure prediction (CASP)—round x J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 82, 1-6, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:hMod-77fHWUC Cited by: 489

A modified definition of Sov, a segment‐based measure for protein secondary structure prediction assessment A Zemla, Č Venclovas, K Fidelis, B Rost Proteins: Structure, Function, and Bioinformatics 34 (2), 220-223, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u-x6o8ySG0sC Cited by: 478

Critical assessment of methods of protein structure prediction (CASP)—Round XII J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 86, 7-15, 2018 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ZHo1McVdvXMC Cited by: 375

Critical assessment of methods of protein structure prediction (CASP)—Round XIV A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 89 (12), 1607-1617, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UxriW0iASnsC Cited by: 370

Processing and analysis of CASP3 protein structure predictions A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 37 (S3), 22-29, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UeHWp8X0CEIC Cited by: 352

Functional characterization of Ape1 variants identified in the human population MZ Hadi, MA Coleman, K Fidelis, HW Mohrenweiser, DM Wilson III Nucleic acids research 28 (20), 3871-3879, 2000 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Tyk-4Ss8FVUC Cited by: 308

Critical assessment of methods of protein structure prediction—Round VII J Moult, K Fidelis, A Kryshtafovych, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 69 (S8), 3-9, 2007 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2osOgNQ5qMEC Cited by: 294

Critical assessment of methods of protein structure prediction (CASP)‐round V J Moult, K Fidelis, A Zemla, T Hubbard Proteins: Structure, Function, and Bioinformatics 53 (S6), 334-339, 2003 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:d1gkVwhDpl0C Cited by: 289

System and method for integrating and accessing multiple data sources within a data warehouse architecture CR Musick, T Critchlow, M Ganesh, T Slezak, K Fidelis US Patent 7,152,070, 2006 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:QIV2ME_5wuYC Cited by: 284

Critical assessment of methods of protein structure prediction (CASP)—round IX J Moult, K Fidelis, A Kryshtafovych, A Tramontano Proteins: Structure, Function, and Bioinformatics 79 (S10), 1-5, 2011 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:WF5omc3nYNoC Cited by: 274

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 84, 4-14, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:W7OEmFMy1HYC Cited by: 272

Critical assessment of methods of protein structure prediction—Round VIII J Moult, K Fidelis, A Kryshtafovych, B Rost, A Tramontano Proteins: Structure, Function, and Bioinformatics 77 (S9), 1-4, 2009 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2P1L_qKh6hAC Cited by: 255

Progress over the first decade of CASP experiments A Kryshtafovych, Č Venclovas, K Fidelis, J Moult PROTEINS: structure, function, and bioinformatics 61 (S7), 225-236, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:zYLM7Y9cAGgC Cited by: 234

Critical assessment of methods of protein structure prediction (CASP)—round 6 J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 61 (S7), 3-7, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:IjCSPb-OGe4C Cited by: 222

A sliding clamp model for the Rad1 family of cell cycle checkpoint proteins MP Thelen, Č Venclovas, K Fidelis Cell 96 (6), 769-770, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Y0pCki6q_DkC Cited by: 196

Processing and evaluation of predictions in CASP4 A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 45 (S5), 13-21, 2001 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ufrVoPGSRksC Cited by: 186

Assessment of protein disorder region predictions in CASP10 B Monastyrskyy, A Kryshtafovych, J Moult, A Tramontano, K Fidelis Proteins: Structure, Function, and Bioinformatics 82, 127-137, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:e5wmG9Sq2KIC Cited by: 178

Co-authors

Andriy Kryshtafovych googlescholarauthorid:tZxqbAAAAAJ

John Moult googlescholarauthorid:7r7qIkAAAAJ

Anna Tramontano googlescholarauthor_id:HecX1PUAAAAJ

Torsten Schwede googlescholarauthor_id:sX-HeS8AAAAJ

Česlovas Venclovas googlescholarauthor_id:wBKBzVoAAAAJ

Adam Zemla googlescholarauthorid:kFiG64AAAAJ

Tim Hubbard googlescholarauthor_id:LvkRz3UAAAAJ

Burkhard Rost googlescholarauthor_id:BP3ofxcAAAAJ

Maya Topf googlescholarauthor_id:O4iPLEgAAAAJ

Torgeir R. Hvidsten googlescholarauthor_id:rMkIGowAAAAJ

Jan Torleif Pedersen, PhD googlescholarauthor_id:TjpAqJIAAAAJ

Gaetano T Montelione, Constellation… googlescholarauthor_id:mrtpF44AAAAJ

Richard Judson googlescholarauthor_id:ovOQEPQAAAAJ

Andrzej Joachimiak googlescholarauthor_id:8mjZj44AAAAJ

Jerzy Tiuryn googlescholarauthor_id:1iFPnFwAAAAJ

Google Scholar

Krzysztof Fidelis Research Professor, University of California, Davis N/A A large‐scale experiment to assess protein structure prediction methods J Moult, JT Pedersen, R Judson, K Fidelis Proteins: Structure, Function, and Bioinformatics 23 (3), ii-iv, 1995 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:9yKSN-GCB0IC Cited by: 672

Critical assessment of methods of protein structure prediction (CASP): round III J Moult, T Hubbard, K Fidelis, JT Pedersen Proteins: Structure, Function, and Bioinformatics 37 (S3), 2-6, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u5HHmVD_uO8C Cited by: 547

Critical assessment of methods of protein structure prediction (CASP)—Round XIII A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 87 (12), 1011-1020, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:a0OBvERweLwC Cited by: 510

Critical assessment of methods of protein structure prediction (CASP)—round x J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 82, 1-6, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:hMod-77fHWUC Cited by: 489

A modified definition of Sov, a segment‐based measure for protein secondary structure prediction assessment A Zemla, Č Venclovas, K Fidelis, B Rost Proteins: Structure, Function, and Bioinformatics 34 (2), 220-223, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u-x6o8ySG0sC Cited by: 478

Critical assessment of methods of protein structure prediction (CASP)—Round XII J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 86, 7-15, 2018 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ZHo1McVdvXMC Cited by: 375

Critical assessment of methods of protein structure prediction (CASP)—Round XIV A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 89 (12), 1607-1617, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UxriW0iASnsC Cited by: 370

Processing and analysis of CASP3 protein structure predictions A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 37 (S3), 22-29, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UeHWp8X0CEIC Cited by: 352

Functional characterization of Ape1 variants identified in the human population MZ Hadi, MA Coleman, K Fidelis, HW Mohrenweiser, DM Wilson III Nucleic acids research 28 (20), 3871-3879, 2000 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Tyk-4Ss8FVUC Cited by: 308

Critical assessment of methods of protein structure prediction—Round VII J Moult, K Fidelis, A Kryshtafovych, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 69 (S8), 3-9, 2007 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2osOgNQ5qMEC Cited by: 294

Critical assessment of methods of protein structure prediction (CASP)‐round V J Moult, K Fidelis, A Zemla, T Hubbard Proteins: Structure, Function, and Bioinformatics 53 (S6), 334-339, 2003 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:d1gkVwhDpl0C Cited by: 289

System and method for integrating and accessing multiple data sources within a data warehouse architecture CR Musick, T Critchlow, M Ganesh, T Slezak, K Fidelis US Patent 7,152,070, 2006 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:QIV2ME_5wuYC Cited by: 284

Critical assessment of methods of protein structure prediction (CASP)—round IX J Moult, K Fidelis, A Kryshtafovych, A Tramontano Proteins: Structure, Function, and Bioinformatics 79 (S10), 1-5, 2011 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:WF5omc3nYNoC Cited by: 274

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 84, 4-14, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:W7OEmFMy1HYC Cited by: 272

Critical assessment of methods of protein structure prediction—Round VIII J Moult, K Fidelis, A Kryshtafovych, B Rost, A Tramontano Proteins: Structure, Function, and Bioinformatics 77 (S9), 1-4, 2009 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2P1L_qKh6hAC Cited by: 255

Progress over the first decade of CASP experiments A Kryshtafovych, Č Venclovas, K Fidelis, J Moult PROTEINS: structure, function, and bioinformatics 61 (S7), 225-236, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:zYLM7Y9cAGgC Cited by: 234

Critical assessment of methods of protein structure prediction (CASP)—round 6 J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 61 (S7), 3-7, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:IjCSPb-OGe4C Cited by: 222

A sliding clamp model for the Rad1 family of cell cycle checkpoint proteins MP Thelen, Č Venclovas, K Fidelis Cell 96 (6), 769-770, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Y0pCki6q_DkC Cited by: 196

Processing and evaluation of predictions in CASP4 A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 45 (S5), 13-21, 2001 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ufrVoPGSRksC Cited by: 186

Assessment of protein disorder region predictions in CASP10 B Monastyrskyy, A Kryshtafovych, J Moult, A Tramontano, K Fidelis Proteins: Structure, Function, and Bioinformatics 82, 127-137, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:e5wmG9Sq2KIC Cited by: 178

Co-authors

Andriy Kryshtafovych googlescholarauthorid andriykryshtafovych.md:tZ_xqbAAAAAJ

John Moult googlescholarauthorid johnmoult.md:7r7q_IkAAAAJ

Anna Tramontano googlescholarauthorid annatramontano.md:HecX1PUAAAAJ

Torsten Schwede googlescholarauthorid torstenschwede.md:sX-HeS8AAAAJ

Česlovas Venclovas googlescholarauthorid česlovasvenclovas.md:wBKBzVoAAAAJ

Adam Zemla googlescholarauthorid adamzemla.md:kF_iG64AAAAJ

Tim Hubbard googlescholarauthorid timhubbard.md:LvkRz3UAAAAJ

Burkhard Rost googlescholarauthorid burkhardrost.md:BP3ofxcAAAAJ

Maya Topf googlescholarauthorid mayatopf.md:O4iPLEgAAAAJ

Torgeir R. Hvidsten googlescholarauthorid torgeirr._hvidsten.md:rMkIGowAAAAJ

Jan Torleif Pedersen, PhD googlescholarauthorid jantorleifpedersen,phd.md:TjpAqJIAAAAJ

Gaetano T Montelione, Constellation… googlescholarauthorid gaetanotmontelione,constellation….md:mrtpF44AAAAJ

Richard Judson googlescholarauthorid richardjudson.md:ovOQEPQAAAAJ

Andrzej Joachimiak googlescholarauthorid andrzejjoachimiak.md:8mjZj44AAAAJ

Jerzy Tiuryn googlescholarauthorid jerzytiuryn.md:1iFPnFwAAAAJ

Google Scholar

Krzysztof Fidelis

Research Professor, University of California, Davis

N/A

A large‐scale experiment to assess protein structure prediction methods J Moult, JT Pedersen, R Judson, K Fidelis Proteins: Structure, Function, and Bioinformatics 23 (3), ii-iv, 1995 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:9yKSN-GCB0IC

Critical assessment of methods of protein structure prediction (CASP): round III J Moult, T Hubbard, K Fidelis, JT Pedersen Proteins: Structure, Function, and Bioinformatics 37 (S3), 2-6, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u5HHmVD_uO8C

Critical assessment of methods of protein structure prediction (CASP)—Round XIII A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 87 (12), 1011-1020, 2019 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:a0OBvERweLwC

Critical assessment of methods of protein structure prediction (CASP)—round x J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 82, 1-6, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:hMod-77fHWUC

A modified definition of Sov, a segment‐based measure for protein secondary structure prediction assessment A Zemla, Č Venclovas, K Fidelis, B Rost Proteins: Structure, Function, and Bioinformatics 34 (2), 220-223, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:u-x6o8ySG0sC

Critical assessment of methods of protein structure prediction (CASP)—Round XII J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 86, 7-15, 2018 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ZHo1McVdvXMC

Critical assessment of methods of protein structure prediction (CASP)—Round XIV A Kryshtafovych, T Schwede, M Topf, K Fidelis, J Moult Proteins: Structure, Function, and Bioinformatics 89 (12), 1607-1617, 2021 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UxriW0iASnsC

Processing and analysis of CASP3 protein structure predictions A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 37 (S3), 22-29, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:UeHWp8X0CEIC

Functional characterization of Ape1 variants identified in the human population MZ Hadi, MA Coleman, K Fidelis, HW Mohrenweiser, DM Wilson III Nucleic acids research 28 (20), 3871-3879, 2000 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Tyk-4Ss8FVUC

Critical assessment of methods of protein structure prediction—Round VII J Moult, K Fidelis, A Kryshtafovych, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 69 (S8), 3-9, 2007 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2osOgNQ5qMEC

Critical assessment of methods of protein structure prediction (CASP)‐round V J Moult, K Fidelis, A Zemla, T Hubbard Proteins: Structure, Function, and Bioinformatics 53 (S6), 334-339, 2003 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:d1gkVwhDpl0C

System and method for integrating and accessing multiple data sources within a data warehouse architecture CR Musick, T Critchlow, M Ganesh, T Slezak, K Fidelis US Patent 7,152,070, 2006 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:QIV2ME_5wuYC

Critical assessment of methods of protein structure prediction (CASP)—round IX J Moult, K Fidelis, A Kryshtafovych, A Tramontano Proteins: Structure, Function, and Bioinformatics 79 (S10), 1-5, 2011 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:WF5omc3nYNoC

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI J Moult, K Fidelis, A Kryshtafovych, T Schwede, A Tramontano Proteins: Structure, Function, and Bioinformatics 84, 4-14, 2016 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:W7OEmFMy1HYC

Critical assessment of methods of protein structure prediction—Round VIII J Moult, K Fidelis, A Kryshtafovych, B Rost, A Tramontano Proteins: Structure, Function, and Bioinformatics 77 (S9), 1-4, 2009 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:2P1L_qKh6hAC

Progress over the first decade of CASP experiments A Kryshtafovych, Č Venclovas, K Fidelis, J Moult PROTEINS: structure, function, and bioinformatics 61 (S7), 225-236, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:zYLM7Y9cAGgC

Critical assessment of methods of protein structure prediction (CASP)—round 6 J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano Proteins: Structure, Function, and Bioinformatics 61 (S7), 3-7, 2005 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:IjCSPb-OGe4C

A sliding clamp model for the Rad1 family of cell cycle checkpoint proteins MP Thelen, Č Venclovas, K Fidelis Cell 96 (6), 769-770, 1999 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:Y0pCki6q_DkC

Processing and evaluation of predictions in CASP4 A Zemla, Č Venclovas, J Moult, K Fidelis Proteins: Structure, Function, and Bioinformatics 45 (S5), 13-21, 2001 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:ufrVoPGSRksC

Assessment of protein disorder region predictions in CASP10 B Monastyrskyy, A Kryshtafovych, J Moult, A Tramontano, K Fidelis Proteins: Structure, Function, and Bioinformatics 82, 127-137, 2014 Link: https://scholar.google.com/citations?viewop=viewcitation&hl=en&user=9Uf9Z-MAAAAJ&citationforview=9Uf9Z-MAAAAJ:e5wmG9Sq2KIC

Co-authors

Andriy Kryshtafovych googlescholarauthorid andriykryshtafovych.md:tZ_xqbAAAAAJ

John Moult googlescholarauthorid johnmoult.md:7r7q_IkAAAAJ

Anna Tramontano googlescholarauthorid annatramontano.md:HecX1PUAAAAJ

Torsten Schwede googlescholarauthorid torstenschwede.md:sX-HeS8AAAAJ

Česlovas Venclovas googlescholarauthorid česlovasvenclovas.md:wBKBzVoAAAAJ

Adam Zemla googlescholarauthorid adamzemla.md:kF_iG64AAAAJ

Tim Hubbard googlescholarauthorid timhubbard.md:LvkRz3UAAAAJ

Burkhard Rost googlescholarauthorid burkhardrost.md:BP3ofxcAAAAJ

Maya Topf googlescholarauthorid mayatopf.md:O4iPLEgAAAAJ

Torgeir R. Hvidsten googlescholarauthorid torgeirr._hvidsten.md:rMkIGowAAAAJ

Jan Torleif Pedersen, PhD googlescholarauthorid jantorleifpedersen,phd.md:TjpAqJIAAAAJ

Gaetano T Montelione, Constellation… googlescholarauthorid gaetanotmontelione,constellation….md:mrtpF44AAAAJ

Richard Judson googlescholarauthorid richardjudson.md:ovOQEPQAAAAJ

Andrzej Joachimiak googlescholarauthorid andrzejjoachimiak.md:8mjZj44AAAAJ

Jerzy Tiuryn googlescholarauthorid jerzytiuryn.md:1iFPnFwAAAAJ

Youtube Videos

Youtube Title: Krzysztof Fidelis - The Theoretical Acceleration in Identification of Protein Structures

Youtube Link: link

Youtube Channel Name: GoldLab Foundation

Youtube Channel Link: https://www.youtube.com/@goldlabfoundation9914

Krzysztof Fidelis - The Theoretical Acceleration in Identification of Protein Structures

Youtube Title: CASP15 Krzysztof Fidelis

Youtube Link: link

Youtube Channel Name: CASP

Youtube Channel Link: https://www.youtube.com/@CASP-Prediction-Center

CASP15 Krzysztof Fidelis

Youtube Title: 45. Preliminary statistical analysis of amino acid sequence embeddings of proteins

Youtube Link: link

Youtube Channel Name: MoMLeT&DS Workshop

Youtube Channel Link: https://www.youtube.com/@momletdsworkshop3064

45. Preliminary statistical analysis of amino acid sequence embeddings of proteins

Youtube Title: "The Sixties Behind the Iron Curtain" with Malgorzata Fidelis

Youtube Link: link

Youtube Channel Name: UIC Institute for the Humanities

Youtube Channel Link: https://www.youtube.com/@UICHumanities

"The Sixties Behind the Iron Curtain" with Malgorzata Fidelis

Youtube Title: Krzysztof Penderecki St. Luke Passion (1966)

Youtube Link: link

Youtube Channel Name: dpapaod

Youtube Channel Link: https://www.youtube.com/@dpapaod

Krzysztof Penderecki St. Luke Passion (1966)

Youtube Title: Crux Fidelis - score follower video

Youtube Link: link

Youtube Channel Name: Chris Hutchings #ChoirsForClimate

Youtube Channel Link: https://www.youtube.com/@choirsforclimate

Crux Fidelis - score follower video

Youtube Title: Crux fidelis—St. Luke Passion (Penderecki)

Youtube Link: link

Youtube Channel Name: Alejandra Martinez

Youtube Channel Link: https://www.youtube.com/@alejlujah

Crux fidelis—St. Luke Passion (Penderecki)

Youtube Title: JAZZ CITY CHOIR

Youtube Link: link

Youtube Channel Name: MovieArtStudio Witold Bednarczuk

Youtube Channel Link: https://www.youtube.com/@movieartstudio

JAZZ CITY CHOIR

Youtube Title: Krzysztof Penderecki - 'St Luke Passion' - Part I

Youtube Link: link

Youtube Channel Name: Pola Adam

Youtube Channel Link: https://www.youtube.com/@polaadam4566

Krzysztof Penderecki - 'St Luke Passion' - Part I

Youtube Title: Penderecki, St. Luke Passion

Youtube Link: link

Youtube Channel Name: EAS Musikmanagement GmbH

Youtube Channel Link: https://www.youtube.com/@easmusikmanagement6590

Penderecki, St. Luke Passion

Youtube Title: AlphaFold: a solution to a 50-year-old grand challenge in biology

Youtube Link: link

Youtube Channel Name: Everything you Need to know

Youtube Channel Link: https://www.youtube.com/@everythingyouneedtoknow1709

AlphaFold: a solution to a 50-year-old grand challenge in biology

Youtube Title: Introduction to Analysis on the Discrete Cube I

Youtube Link: link

Youtube Channel Name: Simons Institute

Youtube Channel Link: https://www.youtube.com/@SimonsInstituteTOC

Introduction to Analysis on the Discrete Cube I

Youtube Title: Boze Twa Laska - Cantate Deo

Youtube Link: link

Youtube Channel Name: Cantate Deo

Youtube Channel Link: https://www.youtube.com/@Cantatedeomusic

Boze Twa Laska - Cantate Deo

Youtube Videos

Youtube Title: Krzysztof Fidelis - The Theoretical Acceleration in Identification of Protein Structures

Youtube Link: link

Youtube Channel Name: GoldLab Foundation

Youtube Channel Link: https://www.youtube.com/@goldlabfoundation9914

Krzysztof Fidelis - The Theoretical Acceleration in Identification of Protein Structures

Youtube Title: CASP15 Krzysztof Fidelis

Youtube Link: link

Youtube Channel Name: CASP

Youtube Channel Link: https://www.youtube.com/@CASP-Prediction-Center

CASP15 Krzysztof Fidelis

Youtube Title: 45. Preliminary statistical analysis of amino acid sequence embeddings of proteins

Youtube Link: link

Youtube Channel Name: MoMLeT&DS Workshop

Youtube Channel Link: https://www.youtube.com/@momletdsworkshop3064

45. Preliminary statistical analysis of amino acid sequence embeddings of proteins

Youtube Title: "The Sixties Behind the Iron Curtain" with Malgorzata Fidelis

Youtube Link: link

Youtube Channel Name: UIC Institute for the Humanities

Youtube Channel Link: https://www.youtube.com/@UICHumanities

"The Sixties Behind the Iron Curtain" with Malgorzata Fidelis

Youtube Title: Crux fidelis—St. Luke Passion (Penderecki)

Youtube Link: link

Youtube Channel Name: Alejandra Martinez

Youtube Channel Link: https://www.youtube.com/@alejlujah

Crux fidelis—St. Luke Passion (Penderecki)

Youtube Title: Crux Fidelis - score follower video

Youtube Link: link

Youtube Channel Name: Chris Hutchings #ChoirsForClimate

Youtube Channel Link: https://www.youtube.com/@choirsforclimate

Crux Fidelis - score follower video

Youtube Title: JAZZ CITY CHOIR

Youtube Link: link

Youtube Channel Name: MovieArtStudio Witold Bednarczuk

Youtube Channel Link: https://www.youtube.com/@movieartstudio

JAZZ CITY CHOIR

Youtube Title: AlphaFold: a solution to a 50-year-old grand challenge in biology

Youtube Link: link

Youtube Channel Name: Everything you Need to know

Youtube Channel Link: https://www.youtube.com/@everythingyouneedtoknow1709

AlphaFold: a solution to a 50-year-old grand challenge in biology

Youtube Title: Boze Twa Laska - Cantate Deo

Youtube Link: link

Youtube Channel Name: Cantate Deo

Youtube Channel Link: https://www.youtube.com/@Cantatedeomusic

Boze Twa Laska - Cantate Deo

Youtube Title: Introduction to Analysis on the Discrete Cube I

Youtube Link: link

Youtube Channel Name: Simons Institute

Youtube Channel Link: https://www.youtube.com/@SimonsInstituteTOC

Introduction to Analysis on the Discrete Cube I

Youtube Title: Krzysztof Penderecki St. Luke Passion (1966)

Youtube Link: link

Youtube Channel Name: dpapaod

Youtube Channel Link: https://www.youtube.com/@dpapaod

Krzysztof Penderecki St. Luke Passion (1966)










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