doi.bio/mafalda_dias


Mafalda Dias

Overview

Mafalda Dias is a researcher in the field of genomics and computational biology. Her work focuses on the intersection of machine learning, genomics, and evolutionary biology. Dias aims to develop new computational strategies to extract information from genomic data to improve diagnosis and preventative care.

Career

Dias is currently a Group Leader at the Centre for Genomic Regulation (CRG) in Barcelona. Prior to joining CRG, she held various postdoctoral positions at Harvard Medical School, the Deutsches Elektronen-Synchrotron (DESY), the University of Sussex, and University College London. She received her PhD in Theoretical Physics from the University of Sussex in 2013.

Research Contributions

One of Dias' notable contributions is her work on the Evolutionary model of Variant Effects (EVE). This model aims to predict the propensity of pathogenicity of amino acid variants across human disease genes. She has also developed popEVE, a deep generative model that combines evolutionary information with population sequence data to identify causal mutations associated with genetic diseases.

In the field of protein fitness prediction, Dias introduced Tranception, a novel transformer architecture that leverages autoregressive predictions and retrieval of homologous sequences. Tranception has been shown to achieve state-of-the-art performance in predicting the effects of mutations in proteins.

Additionally, Dias has worked on developing guidelines for releasing variant effect predictors (VEPs) to improve their usability and interpretability in the scientific community. She has also conducted research in theoretical physics and early universe cosmology, developing probabilistic models of inflation from string theory.

Selected Publications

Youtube Videos

Youtube Title: Fundamental Physics in the Sky | Mafalda Dias | TEDxSussexUniversity

Youtube Link: link

Youtube Channel Name: TEDx Talks

Youtube Channel Link: https://www.youtube.com/@TEDx

Fundamental Physics in the Sky | Mafalda Dias | TEDxSussexUniversity

Youtube Title: MIA: Mafalda Dias & Jonathan Frazer, interpreting gene variants; Jung-Eun (June) Shin, Ab libraries

Youtube Link: link

Youtube Channel Name: Broad Institute

Youtube Channel Link: https://www.youtube.com/@broadinstitute

MIA: Mafalda Dias & Jonathan Frazer, interpreting gene variants; Jung-Eun (June) Shin, Ab libraries

Youtube Title: Kipoi Seminar - Mafalda Dias & Jonathan Frazer (Harvard Medical School)

Youtube Link: link

Youtube Channel Name: Kipoi Seminar

Youtube Channel Link: https://www.youtube.com/@kipoiseminar1846

Kipoi Seminar - Mafalda Dias & Jonathan Frazer (Harvard Medical School)

Youtube Title: Mutational Scanning Day 2 PM (2 of 11) Mafalda Dias

Youtube Link: link

Youtube Channel Name: CMAP_CEGS

Youtube Channel Link: https://www.youtube.com/@cmap_cegs8443

Mutational Scanning Day 2 PM (2 of 11) Mafalda Dias

Youtube Title: Guardians of the Grid: Vodafone's Head of Large Business Mafalda Dias on Melding Privacy & Progress

Youtube Link: link

Youtube Channel Name: Outgrow

Youtube Channel Link: https://www.youtube.com/@outgrow4497

Guardians of the Grid: Vodafone's Head of Large Business Mafalda Dias on Melding Privacy & Progress

Youtube Title: Digital Power 2019 | Mafalda Dias Head of Large Business at Vodafone is one of the speakers

Youtube Link: link

Youtube Channel Name: Impacting Group

Youtube Channel Link: https://www.youtube.com/@impactinggroup5331

Digital Power 2019 | Mafalda Dias Head of Large Business at Vodafone is one of the speakers

Youtube Title: Gillock Holiday in Paris Mafalda Dias

Youtube Link: link

Youtube Channel Name: pianoalla

Youtube Channel Link: https://www.youtube.com/@pianoalla

Gillock Holiday in Paris Mafalda Dias

Youtube Title: Episode 156- Guardians of the Grid: Vodafone's Head of Large Business Mafalda Dias on Melding Priā€¦

Youtube Link: link

Youtube Channel Name: Outgrow

Youtube Channel Link: https://www.youtube.com/@outgrow4497

Episode 156- Guardians of the Grid: Vodafone's Head of Large Business Mafalda Dias on Melding Pri...

Youtube Title: CASP AI-ZOOM Sep 13, Mafalda Dias and Jonathan Frazer

Youtube Link: link

Youtube Channel Name: Introduction to Bioinformatics by Arne Elofsson at Stockholm University

Youtube Channel Link: https://www.youtube.com/@introductiontobioinformati9910

CASP AI-ZOOM Sep 13, Mafalda Dias and Jonathan Frazer

Youtube Title: Mafalda Dias

Youtube Link: link

Youtube Channel Name: Soraia Aguiar

Youtube Channel Link: https://www.youtube.com/@soraiaaguiar2402

Mafalda Dias