doi.bio/ruben_weitzman
Ruben Weitzman
Ruben Weitzman is a PhD candidate in Computational Biology at the University of Oxford. He is part of the Applied and Theoretical Machine Learning Group in the Computer Science Department, under the co-supervision of Yarin Gal and Debora Marks. Weitzman's research interests lie in the application of machine learning to computational biology, particularly protein language models for generative protein design.
Education and Employment
Weitzman completed a foundation year in Mathematics and Computer Science at Dauphine University in Paris. He then moved to the UK and obtained a Bachelor of Engineering in Bioengineering and Biomedical Engineering from Imperial College London. During his time at Imperial, he developed an interest in pluri-disciplinary approaches to healthcare and gained experience in bioinformatics as an Amgen Scholar.
Following his bachelor's degree, Weitzman pursued a Master of Philosophy in Computational Biology at the University of Cambridge. His master's thesis, supervised by Dr. Bianca Dumitrascu, was titled "Multimodal single-cell prediction using DPCCA". During his time at Cambridge, he also completed an 8-week research internship in Andrea Brand's lab at the Gurdon Institute, where he analysed single-cell brain data and performed RNA interference experiments on Drosophila.
Weitzman is currently a PhD student at the University of Oxford, funded by an EPSRC and Kellogg Scholarship. His PhD thesis focuses on machine learning applications in the healthcare sector, specifically in bio-chemistry and bioinformatics problems.
Publications
Weitzman has been involved in the following publications during his time at Oxford:
- ProteinNPT - Improving Protein Property Prediction and Design with Non-Parametric Transformers (co-authored with Pascal Notin, Debora Marks, and Yarin Gal)
- ProteinGym - Large-Scale Benchmarks for Protein Fitness Prediction and Design (co-authored with Pascal Notin, Aaron W. Kollasch, Daniel Ritter, and others, including Yarin Gal and Debora Marks)
Youtube Videos
Youtube Title: MSS 2024 Day 1 Talk 11 Ruben Weitzman
Youtube Link: link
Youtube Channel Name: CMAP_CEGS
Youtube Channel Link: https://www.youtube.com/@cmap_cegs8443
MSS 2024 Day 1 Talk 11 Ruben Weitzman
Youtube Title: 7 Genius Designs to Help Us Through the Pandemic | Fast Company
Youtube Link: link
Youtube Channel Name: Fast Company
Youtube Channel Link: https://www.youtube.com/@FastCompany
7 Genius Designs to Help Us Through the Pandemic | Fast Company
Youtube Title: Algebraic curves defined by singular instanton homology
Youtube Link: link
Youtube Channel Name: ICTP Mathematics
Youtube Channel Link: https://www.youtube.com/@ictpmathematics6835
Algebraic curves defined by singular instanton homology
Youtube Title: JFK anniversary: second gunman named
Youtube Link: link
Youtube Channel Name: The Telegraph
Youtube Channel Link: https://www.youtube.com/@telegraph
JFK anniversary: second gunman named
Youtube Title: 2024 MUSA Smart Cities Practicum
Youtube Link: link
Youtube Channel Name: Weitzman School of Design at Penn
Youtube Channel Link: https://www.youtube.com/@WeitzmanSchool
2024 MUSA Smart Cities Practicum
Youtube Title: The Sassoons’ Philanthropy: The Interaction of Politics, Business, and Charity
Youtube Link: link
Youtube Channel Name: Katz Center for Advanced Judaic Studies
Youtube Channel Link: https://www.youtube.com/@katzcenter
The Sassoons’ Philanthropy: The Interaction of Politics, Business, and Charity
Youtube Title: The Weitzman School of Design Presents: Ernesto Pujol
Youtube Link: link
Youtube Channel Name: Weitzman School of Design at Penn
Youtube Channel Link: https://www.youtube.com/@WeitzmanSchool
The Weitzman School of Design Presents: Ernesto Pujol
Youtube Title: Faculty of Engineering - Department of BioEngineering
Youtube Link: link
Youtube Channel Name: Imperial College London
Youtube Channel Link: https://www.youtube.com/@imperialcollegevideo
Faculty of Engineering - Department of BioEngineering
Youtube Title: Colloquium Feb 09, 2023 - ULTRASAT: Revolutionizing Our Understanding of the Hot Transient Universe
Youtube Link: link
Youtube Channel Name: NYU Physics
Youtube Channel Link: https://www.youtube.com/@NYUPhysics
Colloquium Feb 09, 2023 - ULTRASAT: Revolutionizing Our Understanding of the Hot Transient Universe
Youtube Title: "Once And For All" (cover) - performed on 10/16/22
Youtube Link: link
Youtube Channel Name: DFW Special Music
Youtube Channel Link: https://www.youtube.com/@DFWSpecialMusic
"Once And For All" (cover) - performed on 10/16/22
Youtube Title: "The Rising Cost of Climate Change: Evidence from the Bond Market"
Youtube Link: link
Youtube Channel Name: E-axes Forum on Climate Change, Macro and, Finance
Youtube Channel Link: https://www.youtube.com/@e-axesforum
"The Rising Cost of Climate Change: Evidence from the Bond Market"
Youtube Title: MCAA Around the World Webinar Series #10 - The Ups & Downs of Running a Spinoff Company for 24 Years
Youtube Link: link
Youtube Channel Name: Marie Curie Alumni Association - MCAA
Youtube Channel Link: https://www.youtube.com/@mariecuriealumniassociation
MCAA Around the World Webinar Series #10 - The Ups & Downs of Running a Spinoff Company for 24 Years
Youtube Title: The Innocence of Lee Harvey Oswald
Youtube Link: link
Youtube Channel Name: City of Allen - ACTV
Youtube Channel Link: https://www.youtube.com/@AllenCityTV
The Innocence of Lee Harvey Oswald
Youtube Title: The Digital Cavemen of Linked Lascaux / Ruben Verborgh
Youtube Link: link
Youtube Channel Name: SWIB
Youtube Channel Link: https://www.youtube.com/@swib9211
The Digital Cavemen of Linked Lascaux / Ruben Verborgh
Youtube Title: FARM Rio sweater dress + Stuart Weitzman boots = ❤️
Youtube Link: link
Youtube Channel Name: The Modest Fashionista
Youtube Channel Link: https://www.youtube.com/@TheModestFashionista
FARM Rio sweater dress + Stuart Weitzman boots = ❤️
Youtube Title: 100 WARDROBE MUST HAVES | according to 2000's fashion book
Youtube Link: link
Youtube Channel Name: Lena Davydova
Youtube Channel Link: https://www.youtube.com/@LenaDavydova
100 WARDROBE MUST HAVES | according to 2000's fashion book